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edibble - Encapsulating Elements of Experimental Design

A system to facilitate designing comparative (and non-comparative) experiments using the grammar of experimental designs <https://emitanaka.org/edibble-book/>. An experimental design is treated as an intermediate, mutable object that is built progressively by fundamental experimental components like units, treatments, and their relation. The system aids in experimental planning, management and workflow.

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experimental-designs

6.98 score 219 stars 88 scripts 697 downloads

shinycustomloader - Custom Loader for Shiny Outputs

A custom css/html or gif/image file for the loading screen in R 'shiny'. It also can use the marquee to have custom text loading screen.

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rshinyshiny

6.88 score 120 stars 12 dependents 271 scripts 1.3k downloads

heritable - Heritability Estimation from Mixed Models

Reporting heritability estimates is an important to quantitative genetics studies and breeding experiments. Here we provide functions to calculate various broad-sense heritabilities from 'asreml' and 'lme4' model objects. All methods we have implemented in this package have extensively discussed in the article by Schmidt et al. (2019) <doi:10.1534/genetics.119.302134>.

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6.30 score 7 stars 6 scripts 504 downloads

heritable - Heritability Estimation from Mixed Models

Reporting heritability estimates is an important to quantitative genetics studies and breeding experiments. Here we provide functions to calculate various broad-sense heritabilities from 'asreml' and 'lme4' model objects. All methods we have implemented in this package have extensively discussed in the article by Schmidt et al. (2019) <doi:10.1534/genetics.119.302134>.

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6.30 score 7 stars 6 scripts 506 downloads

anicon - Animated icons for R Markdown and Shiny

This package allows easy insertion of animated icons into R Markdown html outputs.

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font-awesomefontawesomeiconrmarkdownrshinyshinyxaringan

5.68 score 123 stars 77 scripts

dir - Interactive Directory Listing

A HTML widget for pretty directory listing with collapsible folders.

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5.14 score 6 stars 459 scripts

nestr - Build Nesting or Hierarchical Structures

Facilitates building a nesting or hierarchical structure as a list or data frame by using a human friendly syntax.

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4.44 score 13 stars 1 dependents 14 scripts 239 downloads

moodlequiz - R Markdown format for 'Moodle' XML cloze quizzes

Enables the creation of 'Moodle' quiz questions using literate programming with R Markdown. This makes it easy to quickly create a quiz that can be randomly replicated with new datasets, questions, and options for answers.

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4.23 score 4 stars 17 scripts 493 downloads

datalegreyar - A tool to easily insert datalegreya for html output.

Datalegreya is a typeface which can interweave data curves with text. This package allows easy insertion of datalegreya font for html output such as Rmarkdown, xaringan, ioslides and shiny app.

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rmarkdown

3.35 score 45 stars 6 scripts

smbdata - Data from "Statistical Methods in Biology"

All data in the book "Statistical Methods in Biology" by Welham et al. (2015) <doi:10.1201/b17336> with a corresponding documentation and illustrative analysis of the data.

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3.30 score 1 stars 154 downloads

metaextractoR - Data Extraction for Meta-Analysis with Large Language Models

Use Large Language Models (LLMs) to assist with data extraction for meta-analysis. This package incorporates three modular Shiny apps to implement a human-in-the-loop framework. (1) a manual extraction interface for abstracts, (2) refining prompt engineering and model selection, and (3) validation of LLM-generated outputs. These apps enable researchers to iteratively collaborate with LLMs, with each abstract undergoing double data extraction—once manually by a human researcher and once independently by an LLM-assisted process—to emulate the double extraction process recommended by international standards. Notably, the package runs fully on local machines, with no need for API setup or external data transfer, maximising data privacy and accessibility. Robust logging features further enhance transparency and reproducibility by recording all prompt iterations and outputs.

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3.20 score 4 stars 5 scripts

deggust - Visualise experimental designs from edibble as ggplot graphics

Visualisation of designs as ggplot graphics.

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ggplot-extension

3.03 score 12 stars 18 scripts

emend - Cleaning Text Data with an AI Assistant

Provides functions to clean and standardize messy data, including textual categories and free-text addresses, using Large Language Models. The package corrects typos, expands abbreviations, and maps inconsistent entries to standardized values. Ideal for Bioinformatics, business, and general data cleaning tasks.

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2.93 score 17 stars 3 scripts 38 downloads

canvasquiz - Quiz For Canvas Learning Management System

Create, manipulate and get classic quizzes directly via Canvas learning management system's API.

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2.30 score 5 scripts

yowie - Longitudinal Wages Data from the National Longitudinal Survey of Youth 1979

Longitudinal wages datasets and several demographic variables from the National Longitudinal Survey of Youth from 1979 to 2018. There are three data sets in this package: The wages data from the NLSY79 cohort; The wages data of the high school dropouts and; The demographic data of NLSY79 cohort.

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2.18 score 1 stars 15 scripts 26 downloads

granular - Resolving starch granule distributions

Work out distributions.

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1.70 score 6 scripts