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edibble - Encapsulating Elements of Experimental Design

A system to facilitate designing comparative (and non-comparative) experiments using the grammar of experimental designs <https://emitanaka.org/edibble-book/>. An experimental design is treated as an intermediate, mutable object that is built progressively by fundamental experimental components like units, treatments, and their relation. The system aids in experimental planning, management and workflow.

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experimental-designs

7.62 score 223 stars 1 dependents 125 scripts 577 downloads

shinycustomloader - Custom Loader for Shiny Outputs

A custom css/html or gif/image file for the loading screen in R 'shiny'. It also can use the marquee to have custom text loading screen.

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rshinyshiny

6.75 score 121 stars 12 dependents 258 scripts 962 downloads

heritable - Heritability Estimation from Linear Mixed Models

Provides flexible estimation of broad- and narrow-sense heritability from linear mixed models fitted with 'asreml' or 'lme4'. Implements commonly used estimators, including the Standard, Cullis, Oakey, Piepho, and Delta methods. Supports complex model structures, marginal and environment-specific heritability for genotype-by-environment models, and confidence intervals based on parametric bootstrap. The implemented estimators include methods discussed by Schmidt et al. (2019) <doi:10.1534/genetics.119.302134>.

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6.51 score 7 stars 8 scripts 184 downloads

heritable - Heritability Estimation from Linear Mixed Models

Provides flexible estimation of broad- and narrow-sense heritability from linear mixed models fitted with 'asreml' or 'lme4'. Implements commonly used estimators, including the Standard, Cullis, Oakey, Piepho, and Delta methods. Supports complex model structures, marginal and environment-specific heritability for genotype-by-environment models, and confidence intervals based on parametric bootstrap. The implemented estimators include methods discussed by Schmidt et al. (2019) <doi:10.1534/genetics.119.302134>.

Last updated

6.51 score 7 stars 8 scripts 184 downloads

anicon - Animated icons for R Markdown and Shiny

This package allows easy insertion of animated icons into R Markdown html outputs.

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font-awesomefontawesomeiconrmarkdownrshinyshinyxaringan

5.67 score 123 stars 76 scripts

dir - Interactive Directory Listing

A HTML widget for pretty directory listing with collapsible folders.

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5.43 score 6 stars 898 scripts

nestr - Build Nesting or Hierarchical Structures

Facilitates building a nesting or hierarchical structure as a list or data frame by using a human friendly syntax.

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4.59 score 13 stars 2 dependents 10 scripts 351 downloads

moodlequiz - R Markdown format for 'Moodle' XML cloze quizzes

Enables the creation of 'Moodle' quiz questions using literate programming with R Markdown. This makes it easy to quickly create a quiz that can be randomly replicated with new datasets, questions, and options for answers.

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4.23 score 4 stars 17 scripts 361 downloads

datalegreyar - A tool to easily insert datalegreya for html output.

Datalegreya is a typeface which can interweave data curves with text. This package allows easy insertion of datalegreya font for html output such as Rmarkdown, xaringan, ioslides and shiny app.

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rmarkdown

3.35 score 45 stars 6 scripts

smbdata - Data from "Statistical Methods in Biology"

All data in the book "Statistical Methods in Biology" by Welham et al. (2015) <doi:10.1201/b17336> with a corresponding documentation and illustrative analysis of the data.

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3.30 score 1 stars 113 downloads

metaextractoR - Data Extraction for Meta-Analysis with Large Language Models

Use Large Language Models (LLMs) to assist with data extraction for meta-analysis. This package incorporates three modular Shiny apps to implement a human-in-the-loop framework. (1) a manual extraction interface for abstracts, (2) refining prompt engineering and model selection, and (3) validation of LLM-generated outputs. These apps enable researchers to iteratively collaborate with LLMs, with each abstract undergoing double data extraction—once manually by a human researcher and once independently by an LLM-assisted process—to emulate the double extraction process recommended by international standards. Notably, the package runs fully on local machines, with no need for API setup or external data transfer, maximising data privacy and accessibility. Robust logging features further enhance transparency and reproducibility by recording all prompt iterations and outputs.

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3.00 score 4 stars 5 scripts

deggust - Visualise experimental designs from edibble as ggplot graphics

Visualisation of designs as ggplot graphics.

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ggplot-extension

2.98 score 12 stars 16 scripts

emend - Cleaning Text Data with an AI Assistant

Provides functions to clean and standardize messy data, including textual categories and free-text addresses, using Large Language Models. The package corrects typos, expands abbreviations, and maps inconsistent entries to standardized values. Ideal for Bioinformatics, business, and general data cleaning tasks.

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2.93 score 17 stars 3 scripts 30 downloads

canvasquiz - Quiz For Canvas Learning Management System

Create, manipulate and get classic quizzes directly via Canvas learning management system's API.

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2.30 score 5 scripts

yowie - Longitudinal Wages Data from the National Longitudinal Survey of Youth 1979

Longitudinal wages datasets and several demographic variables from the National Longitudinal Survey of Youth from 1979 to 2018. There are three data sets in this package: The wages data from the NLSY79 cohort; The wages data of the high school dropouts and; The demographic data of NLSY79 cohort.

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2.18 score 1 stars 15 scripts 17 downloads

granular - Resolving starch granule distributions

Work out distributions.

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1.70 score 6 scripts