Package: edibble 1.1.1

edibble: Encapsulating Elements of Experimental Design

A system to facilitate designing comparative (and non-comparative) experiments using the grammar of experimental designs <https://emitanaka.org/edibble-book/>. An experimental design is treated as an intermediate, mutable object that is built progressively by fundamental experimental components like units, treatments, and their relation. The system aids in experimental planning, management and workflow.

Authors:Emi Tanaka [aut, cre, cph]

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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
edibble/json (API)

# Install 'edibble' in R:

install.packages('edibble', repos = c('https://emitanaka.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/emitanaka/edibble/issues

Pkgdown/docs site:https://edibble.emitanaka.org

Datasets:

lady_tasting_tea - Lady tasting tea
skittles - Skittles experiment

On CRAN:

experimental-designs

6.98 score 219 stars 88 scripts 697 downloads 99 exports 82 dependencies

Last updated from:09bad41332. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	194
source / vignettes	OK	222
linux-release-x86_64	WARNING	219
macos-release-arm64	WARNING	167
macos-oldrel-arm64	WARNING	200
windows-devel	WARNING	123
windows-release	WARNING	124
windows-oldrel	WARNING	120
wasm-release	OK	125

Exports:%>%activate_provenance allot_table allot_trts allot_units as_edibble assign_trts assign_units autofill_rcrds column conditioned_on count_by crossed_by design design_anatomy design_model edbl_design edbl_table examine_process examine_process_values examine_recipe expect_rcrds export_design fct fct_attrs fct_edges fct_generator fct_graph fct_nodes graph_input index_levels is_cross_levels is_edibble is_edibble_design is_edibble_graph is_edibble_levels is_edibble_table is_fct is_named_design is_nest_levels is_provenance is_rcrd is_takeout is_trt is_unit label_distinct label_nested label_seq_from_length label_seq_from_to label_seq_length label_seq_to_length latin_array latin_rectangle latin_square lvl_edges lvl_nodes lvls menu_bibd menu_crd menu_factorial menu_graeco menu_hyper_graeco menu_lsd menu_rcbd menu_split menu_strip menu_youden nested_in nesting_structure new_edibble order_trts pivot_trts_widelist pivot_trts_widetable plot_fct_graph plot_lvl_graph Provenance redesign rescale_values scan_menu serve_table set_attrs set_rcrds set_rcrds_of set_trts set_units simulate_process simulate_rcrds split_by takeout to_be_character to_be_date to_be_factor to_be_integer to_be_numeric to_be_time trts_table with_params with_value with_variables

Dependencies:abind AlgDesign backports boot broom car carData cli colorspace corrplot cowplot cpp11 dae Deriv doBy dplyr farver forecast Formula fracdiff generics ggplot2 ggpubr ggrepel ggsci ggsignif glue gridExtra gtable isoband labeling lattice lifecycle lme4 lmtest magrittr MASS Matrix MatrixModels mgcv microbenchmark minqa modelr nestr nlme nloptr nnet numDeriv pbkrtest pillar pkgconfig plyr polynom purrr quantreg R6 rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang rstatix S7 scales SparseM stringi stringr survival tibble tidyr tidyselect timeDate tryCatchLog urca utf8 vctrs viridisLite withr zoo

Defining structure

Rendered fromdefining-structure.Rmdusingknitr::rmarkdown

Last update: 2023-11-19
Started: 2023-11-19

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
edibble: Encapsulating Elements of Experimental Design	edibble-package edibble
Activate the provenance in the edibble design object	activate_provenance
Allot treatments to units and serve table	allot_table
Define allotment of treatments to units	allot_trts
Define allotment of units to nested units	allot_units
Convert an edibble data frame to normal data frame	as_tibble.edbl_table
Convert edibble table to normal data frame	as.data.frame.edbl_table
Assign treatments or units to units	assign_fcts assign_trts assign_units
Autofill the records	autofill_rcrds
Select a column.	column
Specify the units to cross to index a new unit	crossed_by
Start the edibble design	design redesign
Anatomy of the design	design_anatomy
Get the node or edge data from an edibble design	design_data fct_edges fct_nodes lvl_edges lvl_nodes
A baseline model for given experimental design	design_model
Test and get edibble objects	design-helpers edbl_design edbl_table is_cross_levels is_edibble is_edibble_design is_edibble_graph is_edibble_levels is_edibble_table is_named_design is_nest_levels
Examine the simulation process	examine_process examine_process_values
Check the recipe code	examine_recipe
Set the expected values for recording variables	expect_rcrds
Expected type of data entry	expect-vars to_be_character to_be_date to_be_factor to_be_integer to_be_numeric to_be_time
Export the design to xlsx	export_design
Setting the traits of factors	fct fct_attrs
Factor name generator	fct_generator
Factor graph	fct_graph
Print intermediate experimental design to terminal	formatting print.edbl_design
A function to process input as input for graph manipulation	graph_input
Check if an object is an instance of the "Provenance" class.	is_provenance
A function to check if the output is a takeout design	is_takeout
Label with nested or distinct labels	index_levels label_distinct label_nested
Generate a sequence of labels with custom formatting options	label_seq label_seq_from_length label_seq_from_to label_seq_length label_seq_to_length
Lady tasting tea	lady_tasting_tea
Latin square designs and its generalisations as an array	latin latin_array latin_rectangle latin_square
Setting the traits of the levels	lvls
Balance incomplete block design	menu_bibd
Completely randomised design	menu_crd
Prepare a factorial design	menu_factorial
Graeco-Latin Square Design	menu_graeco
Hyper-Graeco-Latin Square Design	menu_hyper_graeco
Prepare classical Latin square design	menu_lsd
Prepare a randomised complete block design	menu_rcbd
Split-unit design	menu_split
Strip-unit design	menu_strip
Youden square design	menu_youden
Specify the nesting or conditional structure for units or treatments	conditioned_on nested_in
Get the nesting structure for the units	nesting_structure
An edibble table constructor	as_edibble new_edibble
A custom ordering algorithm	order_trts
Interactive plot of the edibble design	plot.edbl_design plot.edbl_table plot_fct_graph plot_lvl_graph
An object to query, record and modify an edibble graph	Provenance
Rescale a numerical vector	rescale_values
Find the short names of the named designs	scan_menu
Serve edibble table	serve_table
Set the experimental context as metadata	set_attrs
Set records for given unit	set_rcrds set_rcrds_of
Set the treatment variables	set_trts
Set units used in experiment	set_units
Simulation process	simulate_process
Simulate records	simulate_rcrds
Skittles experiment	skittles
Split or count the data according to certain factors	count_by split_by
Create a named experimental design	takeout
Treatments table	trts_table
Utility functions for edibble variable	as.character.edbl_fct as.integer.edbl_fct is_fct is_rcrd is_trt is_unit utility-edibble-var
This is a helper function to set the parameter values	with_params
Validation values	with_value
A helper function to set variables that the record is dependent on.	with_variables