{
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"Title": "Encapsulating Elements of Experimental Design",
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"Description": "A system to facilitate designing comparative (and\nnon-comparative) experiments using the grammar of experimental\ndesigns . An experimental\ndesign is treated as an intermediate, mutable object that is\nbuilt progressively by fundamental experimental components like\nunits, treatments, and their relation. The system aids in\nexperimental planning, management and workflow.",
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"Encoding": "UTF-8",
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"BugReports": "https://github.com/emitanaka/edibble/issues",
"VignetteBuilder": "knitr",
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"User": "root"
},
"Author": "Emi Tanaka [aut, cre, cph] (ORCID:\n)",
"Maintainer": "Emi Tanaka ",
"MD5sum": "8d5ac0354e581b27c3913bbd4262d42c",
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"_published": "2026-05-22T11:49:54.141Z",
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"description": "Senior Lecturer in Statistics. My research is on combination of statistics, genetics and computing. My application focus is in plant breeding."
},
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"allot_table",
"allot_trts",
"allot_units",
"as_edibble",
"assign_trts",
"assign_units",
"autofill_rcrds",
"column",
"conditioned_on",
"count_by",
"crossed_by",
"design",
"design_anatomy",
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"edbl_design",
"edbl_table",
"examine_process",
"examine_process_values",
"examine_recipe",
"expect_rcrds",
"export_design",
"fct",
"fct_attrs",
"fct_edges",
"fct_generator",
"fct_graph",
"fct_nodes",
"graph_input",
"index_levels",
"is_cross_levels",
"is_edibble",
"is_edibble_design",
"is_edibble_graph",
"is_edibble_levels",
"is_edibble_table",
"is_fct",
"is_named_design",
"is_nest_levels",
"is_provenance",
"is_rcrd",
"is_takeout",
"is_trt",
"is_unit",
"label_distinct",
"label_nested",
"label_seq_from_length",
"label_seq_from_to",
"label_seq_length",
"label_seq_to_length",
"latin_array",
"latin_rectangle",
"latin_square",
"lvl_edges",
"lvl_nodes",
"lvls",
"menu_bibd",
"menu_crd",
"menu_factorial",
"menu_graeco",
"menu_hyper_graeco",
"menu_lsd",
"menu_rcbd",
"menu_split",
"menu_strip",
"menu_youden",
"nested_in",
"nesting_structure",
"new_edibble",
"order_trts",
"pivot_trts_widelist",
"pivot_trts_widetable",
"plot_fct_graph",
"plot_lvl_graph",
"Provenance",
"redesign",
"rescale_values",
"scan_menu",
"serve_table",
"set_attrs",
"set_rcrds",
"set_rcrds_of",
"set_trts",
"set_units",
"simulate_process",
"simulate_rcrds",
"split_by",
"takeout",
"to_be_character",
"to_be_date",
"to_be_factor",
"to_be_integer",
"to_be_numeric",
"to_be_time",
"trts_table",
"with_params",
"with_value",
"with_variables"
],
"_datasets": [
{
"name": "lady_tasting_tea",
"title": "Lady tasting tea",
"object": "lady_tasting_tea",
"class": [
"tbl_df",
"tbl",
"data.frame"
],
"fields": [
"cup",
"first",
"guess",
"correct"
],
"rows": 8,
"table": true,
"tojson": true
},
{
"name": "skittles",
"title": "Skittles experiment",
"object": "skittles",
"class": [
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"tbl_df",
"tbl",
"data.frame"
],
"fields": [
"skittle_type",
"person",
"order",
"choice",
"real_skittle",
"correct"
],
"rows": 30,
"table": true,
"tojson": true
}
],
"_help": [
{
"page": "edibble-package",
"title": "edibble: Encapsulating Elements of Experimental Design",
"topics": [
"edibble-package",
"edibble"
]
},
{
"page": "activate_provenance",
"title": "Activate the provenance in the edibble design object",
"topics": [
"activate_provenance"
]
},
{
"page": "allot_table",
"title": "Allot treatments to units and serve table",
"topics": [
"allot_table"
]
},
{
"page": "allot_trts",
"title": "Define allotment of treatments to units",
"concept": [
"user-facing functions"
],
"topics": [
"allot_trts"
]
},
{
"page": "allot_units",
"title": "Define allotment of units to nested units",
"concept": [
"user-facing functions"
],
"topics": [
"allot_units"
]
},
{
"page": "as_tibble.edbl_table",
"title": "Convert an edibble data frame to normal data frame",
"topics": [
"as_tibble.edbl_table"
]
},
{
"page": "as.data.frame.edbl_table",
"title": "Convert edibble table to normal data frame",
"topics": [
"as.data.frame.edbl_table"
]
},
{
"page": "assign_fcts",
"title": "Assign treatments or units to units",
"topics": [
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"assign_trts",
"assign_units"
]
},
{
"page": "autofill_rcrds",
"title": "Autofill the records",
"topics": [
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]
},
{
"page": "column",
"title": "Select a column.",
"topics": [
"column"
]
},
{
"page": "crossed_by",
"title": "Specify the units to cross to index a new unit",
"topics": [
"crossed_by"
]
},
{
"page": "design",
"title": "Start the edibble design",
"concept": [
"user-facing functions"
],
"topics": [
"design",
"redesign"
]
},
{
"page": "design_anatomy",
"title": "Anatomy of the design",
"topics": [
"design_anatomy"
]
},
{
"page": "design_data",
"title": "Get the node or edge data from an edibble design",
"concept": [
"design manipulators"
],
"topics": [
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"fct_edges",
"fct_nodes",
"lvl_edges",
"lvl_nodes"
]
},
{
"page": "design_model",
"title": "A baseline model for given experimental design",
"topics": [
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]
},
{
"page": "design-helpers",
"title": "Test and get edibble objects",
"topics": [
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"edbl_design",
"edbl_table",
"is_cross_levels",
"is_edibble",
"is_edibble_design",
"is_edibble_graph",
"is_edibble_levels",
"is_edibble_table",
"is_named_design",
"is_nest_levels"
]
},
{
"page": "examine_process",
"title": "Examine the simulation process",
"topics": [
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"examine_process_values"
]
},
{
"page": "examine_recipe",
"title": "Check the recipe code",
"topics": [
"examine_recipe"
]
},
{
"page": "expect_rcrds",
"title": "Set the expected values for recording variables",
"concept": [
"user-facing functions"
],
"topics": [
"expect_rcrds"
]
},
{
"page": "expect-vars",
"title": "Expected type of data entry",
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"to_be_character",
"to_be_date",
"to_be_factor",
"to_be_integer",
"to_be_numeric",
"to_be_time"
]
},
{
"page": "export_design",
"title": "Export the design to xlsx",
"concept": [
"user-facing functions"
],
"topics": [
"export_design"
]
},
{
"page": "fct",
"title": "Setting the traits of factors",
"topics": [
"fct",
"fct_attrs"
]
},
{
"page": "fct_generator",
"title": "Factor name generator",
"topics": [
"fct_generator"
]
},
{
"page": "fct_graph",
"title": "Factor graph",
"topics": [
"fct_graph"
]
},
{
"page": "formatting",
"title": "Print intermediate experimental design to terminal",
"topics": [
"formatting",
"print.edbl_design"
]
},
{
"page": "graph_input",
"title": "A function to process input as input for graph manipulation",
"topics": [
"graph_input"
]
},
{
"page": "is_provenance",
"title": "Check if an object is an instance of the \"Provenance\" class.",
"topics": [
"is_provenance"
]
},
{
"page": "is_takeout",
"title": "A function to check if the output is a takeout design",
"topics": [
"is_takeout"
]
},
{
"page": "label_nested",
"title": "Label with nested or distinct labels",
"topics": [
"index_levels",
"label_distinct",
"label_nested"
]
},
{
"page": "label_seq",
"title": "Generate a sequence of labels with custom formatting options",
"topics": [
"label_seq",
"label_seq_from_length",
"label_seq_from_to",
"label_seq_length",
"label_seq_to_length"
]
},
{
"page": "lady_tasting_tea",
"title": "Lady tasting tea",
"concept": [
"experimental data"
],
"topics": [
"lady_tasting_tea"
]
},
{
"page": "latin",
"title": "Latin square designs and its generalisations as an array",
"topics": [
"latin",
"latin_array",
"latin_rectangle",
"latin_square"
]
},
{
"page": "lvls",
"title": "Setting the traits of the levels",
"topics": [
"lvls"
]
},
{
"page": "menu_bibd",
"title": "Balance incomplete block design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_bibd"
]
},
{
"page": "menu_crd",
"title": "Completely randomised design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_crd"
]
},
{
"page": "menu_factorial",
"title": "Prepare a factorial design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_factorial"
]
},
{
"page": "menu_graeco",
"title": "Graeco-Latin Square Design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_graeco"
]
},
{
"page": "menu_hyper_graeco",
"title": "Hyper-Graeco-Latin Square Design",
"concept": [
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],
"topics": [
"menu_hyper_graeco"
]
},
{
"page": "menu_lsd",
"title": "Prepare classical Latin square design",
"concept": [
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],
"topics": [
"menu_lsd"
]
},
{
"page": "menu_rcbd",
"title": "Prepare a randomised complete block design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_rcbd"
]
},
{
"page": "menu_split",
"title": "Split-unit design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_split"
]
},
{
"page": "menu_strip",
"title": "Strip-unit design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_strip"
]
},
{
"page": "menu_youden",
"title": "Youden square design",
"concept": [
"recipe-designs"
],
"topics": [
"menu_youden"
]
},
{
"page": "nested_in",
"title": "Specify the nesting or conditional structure for units or treatments",
"topics": [
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"nested_in"
]
},
{
"page": "nesting_structure",
"title": "Get the nesting structure for the units",
"topics": [
"nesting_structure"
]
},
{
"page": "new_edibble",
"title": "An edibble table constructor",
"topics": [
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"new_edibble"
]
},
{
"page": "order_trts",
"title": "A custom ordering algorithm",
"topics": [
"order_trts"
]
},
{
"page": "plot.edbl_design",
"title": "Interactive plot of the edibble design",
"topics": [
"plot.edbl_design",
"plot.edbl_table",
"plot_fct_graph",
"plot_lvl_graph"
]
},
{
"page": "Provenance",
"title": "An object to query, record and modify an edibble graph",
"topics": [
"Provenance"
]
},
{
"page": "rescale_values",
"title": "Rescale a numerical vector",
"topics": [
"rescale_values"
]
},
{
"page": "scan_menu",
"title": "Find the short names of the named designs",
"topics": [
"scan_menu"
]
},
{
"page": "serve_table",
"title": "Serve edibble table",
"concept": [
"user-facing functions"
],
"topics": [
"serve_table"
]
},
{
"page": "set_attrs",
"title": "Set the experimental context as metadata",
"topics": [
"set_attrs"
]
},
{
"page": "set_rcrds",
"title": "Set records for given unit",
"concept": [
"user-facing functions"
],
"topics": [
"set_rcrds",
"set_rcrds_of"
]
},
{
"page": "set_trts",
"title": "Set the treatment variables",
"concept": [
"user-facing functions"
],
"topics": [
"set_trts"
]
},
{
"page": "set_units",
"title": "Set units used in experiment",
"concept": [
"user-facing functions"
],
"topics": [
"set_units"
]
},
{
"page": "simulate_process",
"title": "Simulation process",
"topics": [
"simulate_process"
]
},
{
"page": "simulate_rcrds",
"title": "Simulate records",
"topics": [
"simulate_rcrds"
]
},
{
"page": "skittles",
"title": "Skittles experiment",
"concept": [
"experimental data"
],
"topics": [
"skittles"
]
},
{
"page": "split_by",
"title": "Split or count the data according to certain factors",
"topics": [
"count_by",
"split_by"
]
},
{
"page": "takeout",
"title": "Create a named experimental design",
"topics": [
"takeout"
]
},
{
"page": "trts_table",
"title": "Treatments table",
"topics": [
"trts_table"
]
},
{
"page": "utility-edibble-var",
"title": "Utility functions for edibble variable",
"topics": [
"as.character.edbl_fct",
"as.integer.edbl_fct",
"is_fct",
"is_rcrd",
"is_trt",
"is_unit",
"utility-edibble-var"
]
},
{
"page": "with_params",
"title": "This is a helper function to set the parameter values",
"topics": [
"with_params"
]
},
{
"page": "with_value",
"title": "Validation values",
"topics": [
"with_value"
]
},
{
"page": "with_variables",
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